IL_5HAU_244

3D structure

PDB id

5HAU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

ACUCUG*CUGU

Length

10 nucleotides

Bulged bases

5HAU|1|2A|G|2013

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HAU_244 not in the Motif Atlas

Geometric match to IL_7RQB_067

Geometric discrepancy: 0.0719

The information below is about IL_7RQB_067

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76273.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

14

Unit IDs

5HAU|1|2A|A|1715
5HAU|1|2A|C|1716
5HAU|1|2A|U|1717
5HAU|1|2A|C|1718
5HAU|1|2A|U|1719
5HAU|1|2A|G|1720
*
5HAU|1|2A|C|2011
5HAU|1|2A|U|2012
5HAU|1|2A|G|2013
5HAU|1|2A|U|2014

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3

Chain 2M

50S ribosomal protein L14