IL_5HAU_263

3D structure

PDB id

5HAU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCUG*CUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HAU_263 not in the Motif Atlas

Geometric match to IL_4K27_003

Geometric discrepancy: 0.3646

The information below is about IL_4K27_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

5HAU|1|2A|C|2128
5HAU|1|2A|C|2129
5HAU|1|2A|U|2130
5HAU|1|2A|G|2131
*
5HAU|1|2A|C|2200
5HAU|1|2A|U|2201
5HAU|1|2A|G|2202
5HAU|1|2A|G|2203

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2C

50S ribosomal protein L1