IL_5HAU_281

3D structure

PDB id

5HAU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUGAG*CAAGAUGAG

Length

14 nucleotides

Bulged bases

5HAU|1|2A|G|2792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HAU_281 not in the Motif Atlas

Homologous match to IL_7RQB_102

Geometric discrepancy: 0.0515

The information below is about IL_7RQB_102

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.1

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

5HAU|1|2A|U|2647
5HAU|1|2A|U|2648
5HAU|1|2A|G|2649
5HAU|1|2A|A|2650
5HAU|1|2A|G|2651
*
5HAU|1|2A|C|2786
5HAU|1|2A|A|2787
5HAU|1|2A|A|2788
5HAU|1|2A|G|2789
5HAU|1|2A|A|2790
5HAU|1|2A|U|2791
5HAU|1|2A|G|2792
5HAU|1|2A|A|2793
5HAU|1|2A|G|2794

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3

Chain 2L

50S ribosomal protein L13