IL_5HAU_283

3D structure

PDB id

5HAU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCUCU*AUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HAU_283 not in the Motif Atlas

Homologous match to IL_7RQB_104

Geometric discrepancy: 0.0617

The information below is about IL_7RQB_104

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.6

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

14

Unit IDs

5HAU|1|2A|C|2691
5HAU|1|2A|C|2692
5HAU|1|2A|U|2693
5HAU|1|2A|C|2694
5HAU|1|2A|U|2695
*
5HAU|1|2A|A|2737
5HAU|1|2A|U|2738
5HAU|1|2A|G|2739

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3

Chain 2M

50S ribosomal protein L14

Chain 2P

50S ribosomal protein L17

Chain 2R

50S ribosomal protein L19