IL_5HAU_284

3D structure

PDB id

5HAU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUUCC*GGUAG

Length

10 nucleotides

Bulged bases

5HAU|1|2A|U|2700, 5HAU|1|2A|C|2701

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HAU_284 not in the Motif Atlas

Homologous match to IL_7RQB_105

Geometric discrepancy: 0.053

The information below is about IL_7RQB_105

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_08296.3

Basepair signature

cWW-L-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

5HAU|1|2A|U|2698
5HAU|1|2A|U|2699
5HAU|1|2A|U|2700
5HAU|1|2A|C|2701
5HAU|1|2A|C|2702
*
5HAU|1|2A|G|2730
5HAU|1|2A|G|2731
5HAU|1|2A|U|2732
5HAU|1|2A|A|2733
5HAU|1|2A|G|2734

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3

Chain 2P

50S ribosomal protein L17

Chain 2R

50S ribosomal protein L19