IL_5HAU_325

3D structure

PDB id

5HAU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAGUAG*CGCAGAUAC

Length

15 nucleotides

Bulged bases

5HAU|1|2a|A|686

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HAU_325 not in the Motif Atlas

Homologous match to IL_4LFB_031

Geometric discrepancy: 0.0988

The information below is about IL_4LFB_031

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_95727.1

Basepair signature

cWW-L-tSH-L-tHW-tHS-R-cWW-L

Number of instances in this motif group

1

Unit IDs

5HAU|1|2a|G|667
5HAU|1|2a|A|668
5HAU|1|2a|G|669
5HAU|1|2a|U|670
5HAU|1|2a|A|671
5HAU|1|2a|G|672
*
5HAU|1|2a|C|683
5HAU|1|2a|G|684
5HAU|1|2a|C|685
5HAU|1|2a|A|686
5HAU|1|2a|G|687
5HAU|1|2a|A|688
5HAU|1|2a|U|689
5HAU|1|2a|A|690
5HAU|1|2a|C|691

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2k

30S ribosomal protein S11

Chain 2r

30S ribosomal protein S18