IL_5HAU_331

3D structure

PDB id

5HAU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

5HAU|1|2a|C|912

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HAU_331 not in the Motif Atlas

Homologous match to IL_5J7L_041

Geometric discrepancy: 0.1162

The information below is about IL_5J7L_041

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

5HAU|1|2a|G|911
5HAU|1|2a|C|912
5HAU|1|2a|A|913
*
5HAU|1|2a|U|1363
5HAU|1|2a|U|1364
5HAU|1|2a|C|1365
5HAU|1|2a|C|1366
5HAU|1|2a|C|1367

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2g

30S ribosomal protein S7

Chain 2i

30S ribosomal protein S9

Chain 2w

Transfer RNA; tRNA

Chain 2y

mRNA