3D structure

PDB id
5HAU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
GGAGAG*UGGUC
Length
11 nucleotides
Bulged bases
5HAU|1|1a|A|649
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5HAU_362 not in the Motif Atlas
Geometric match to IL_8D29_010
Geometric discrepancy: 0.3871
The information below is about IL_8D29_010
Detailed Annotation
Partly complementary
Broad Annotation
Partly complementary
Motif group
IL_49751.4
Basepair signature
cWW-cWW-cWW-cWW-cWW
Number of instances in this motif group
16

Unit IDs

5HAU|1|1a|G|645
5HAU|1|1a|G|646
5HAU|1|1a|A|647
5HAU|1|1a|G|648
5HAU|1|1a|A|649
5HAU|1|1a|G|650
*
5HAU|1|1a|U|724
5HAU|1|1a|G|725
5HAU|1|1a|G|726
5HAU|1|1a|U|727
5HAU|1|1a|C|728

Current chains

Chain 1a
16S Ribosomal RNA

Nearby chains

Chain 1f
30S ribosomal protein S6
Chain 1o
30S ribosomal protein S15
Chain 1r
30S ribosomal protein S18

Coloring options:


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