IL_5HCP_097

3D structure

PDB id

5HCP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Metalnikowin bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.89 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HCP_097 not in the Motif Atlas

Homologous match to IL_7RQB_103

Geometric discrepancy: 0.0587

The information below is about IL_7RQB_103

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

5HCP|1|1A|C|2663
5HCP|1|1A|U|2664
5HCP|1|1A|A|2665
5HCP|1|1A|G|2666
5HCP|1|1A|U|2667
5HCP|1|1A|A|2668
5HCP|1|1A|C|2669
*
5HCP|1|1A|G|2674
5HCP|1|1A|G|2675
5HCP|1|1A|A|2676
5HCP|1|1A|C|2677
5HCP|1|1A|C|2678
5HCP|1|1A|G|2679

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1H

50S ribosomal protein L6