IL_5HCP_302

3D structure

PDB id

5HCP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Metalnikowin bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.89 Å

Loop

Sequence

GACAAC*GCUAAUC

Length

13 nucleotides

Bulged bases

5HCP|1|2a|U|168

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HCP_302 not in the Motif Atlas

Homologous match to IL_4LFB_009

Geometric discrepancy: 0.0937

The information below is about IL_4LFB_009

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_00680.1

Basepair signature

cWW-L-R-tWH-L-R-L-cWW-cWW

Number of instances in this motif group

3

Unit IDs

5HCP|1|2a|G|143
5HCP|1|2a|A|144
5HCP|1|2a|C|145
5HCP|1|2a|A|146
5HCP|1|2a|A|147
5HCP|1|2a|C|148
*
5HCP|1|2a|G|163
5HCP|1|2a|C|164
5HCP|1|2a|U|165
5HCP|1|2a|A|166
5HCP|1|2a|A|167
5HCP|1|2a|U|168
5HCP|1|2a|C|169

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2t

30S ribosomal protein S20