IL_5HCP_318
3D structure
- PDB id
- 5HCP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antimicrobial peptide Metalnikowin bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.89 Å
Loop
- Sequence
- UGAAAGAC*GGGGAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5HCP_318 not in the Motif Atlas
- Homologous match to IL_4LFB_026
- Geometric discrepancy: 0.2488
- The information below is about IL_4LFB_026
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04211.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
5HCP|1|2a|U|589
5HCP|1|2a|G|590
5HCP|1|2a|A|591
5HCP|1|2a|A|592
5HCP|1|2a|A|593
5HCP|1|2a|G|594
5HCP|1|2a|A|595
5HCP|1|2a|C|596
*
5HCP|1|2a|G|612
5HCP|1|2a|G|613
5HCP|1|2a|G|614
5HCP|1|2a|G|615
5HCP|1|2a|A|616
5HCP|1|2a|G|617
Current chains
- Chain 2a
- 16S Ribosomal RNA
Nearby chains
- Chain 2d
- 30S ribosomal protein S4
- Chain 2h
- 30S ribosomal protein S8
- Chain 2p
- 30S ribosomal protein S16
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