IL_5HCP_323

3D structure

PDB id

5HCP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Metalnikowin bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.89 Å

Loop

Sequence

GAGUAG*CGCAGAUAC

Length

15 nucleotides

Bulged bases

5HCP|1|2a|A|686

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HCP_323 not in the Motif Atlas

Homologous match to IL_4LFB_031

Geometric discrepancy: 0.1065

The information below is about IL_4LFB_031

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_95727.1

Basepair signature

cWW-L-tSH-L-tHW-tHS-R-cWW-L

Number of instances in this motif group

1

Unit IDs

5HCP|1|2a|G|667
5HCP|1|2a|A|668
5HCP|1|2a|G|669
5HCP|1|2a|U|670
5HCP|1|2a|A|671
5HCP|1|2a|G|672
*
5HCP|1|2a|C|683
5HCP|1|2a|G|684
5HCP|1|2a|C|685
5HCP|1|2a|A|686
5HCP|1|2a|G|687
5HCP|1|2a|A|688
5HCP|1|2a|U|689
5HCP|1|2a|A|690
5HCP|1|2a|C|691

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2k

30S ribosomal protein S11