IL_5HCP_353

3D structure

PDB id

5HCP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Metalnikowin bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.89 Å

Loop

Sequence

CGGGAG*CAG

Length

9 nucleotides

Bulged bases

5HCP|1|2a|G|1426

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HCP_353 not in the Motif Atlas

Homologous match to IL_4LFB_064

Geometric discrepancy: 0.332

The information below is about IL_4LFB_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49061.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

6

Unit IDs

5HCP|1|2a|C|1423
5HCP|1|2a|G|1424
5HCP|1|2a|G|1425
5HCP|1|2a|G|1426
5HCP|1|2a|A|1427
5HCP|1|2a|G|1428
*
5HCP|1|2a|C|1437
5HCP|1|2a|A|1438
5HCP|1|2a|G|1439

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2T

50S ribosomal protein L19

Chain 2t

30S ribosomal protein S20