IL_5HCQ_015
3D structure
- PDB id
- 5HCQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- UUAAG*CGGAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5HCQ_015 not in the Motif Atlas
- Homologous match to IL_7RQB_016
- Geometric discrepancy: 0.0433
- The information below is about IL_7RQB_016
- Detailed Annotation
- AAA cross-strand stack
- Broad Annotation
- AAA cross-strand stack
- Motif group
- IL_17136.1
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 24
Unit IDs
5HCQ|1|1A|U|628
5HCQ|1|1A|U|629
5HCQ|1|1A|A|630
5HCQ|1|1A|A|631
5HCQ|1|1A|G|632
*
5HCQ|1|1A|C|642
5HCQ|1|1A|G|643
5HCQ|1|1A|G|644
5HCQ|1|1A|A|645
5HCQ|1|1A|G|646
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1F
- 50S ribosomal protein L4
- Chain 1P
- 50S ribosomal protein L15
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