IL_5HCQ_055

3D structure

PDB id

5HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUAG*CGAAG

Length

9 nucleotides

Bulged bases

5HCQ|1|1A|A|1600

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HCQ_055 not in the Motif Atlas

Homologous match to IL_7RQB_057

Geometric discrepancy: 0.0403

The information below is about IL_7RQB_057

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_04059.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

5HCQ|1|1A|C|1482
5HCQ|1|1A|U|1483
5HCQ|1|1A|A|1484
5HCQ|1|1A|G|1485
*
5HCQ|1|1A|C|1597
5HCQ|1|1A|G|1598
5HCQ|1|1A|A|1599
5HCQ|1|1A|A|1600
5HCQ|1|1A|G|1601

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains