IL_5HCQ_096
3D structure
- PDB id
- 5HCQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- UUGAG*CAAGAUGAG
- Length
- 14 nucleotides
- Bulged bases
- 5HCQ|1|1A|G|2792
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5HCQ_096 not in the Motif Atlas
- Homologous match to IL_7RQB_102
- Geometric discrepancy: 0.0372
- The information below is about IL_7RQB_102
- Detailed Annotation
- tSH-tHS-tHW
- Broad Annotation
- tSH-tHS-tHW
- Motif group
- IL_04638.1
- Basepair signature
- cWW-tSH-tHW-tHS-cSH-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
5HCQ|1|1A|U|2647
5HCQ|1|1A|U|2648
5HCQ|1|1A|G|2649
5HCQ|1|1A|A|2650
5HCQ|1|1A|G|2651
*
5HCQ|1|1A|C|2786
5HCQ|1|1A|A|2787
5HCQ|1|1A|A|2788
5HCQ|1|1A|G|2789
5HCQ|1|1A|A|2790
5HCQ|1|1A|U|2791
5HCQ|1|1A|G|2792
5HCQ|1|1A|A|2793
5HCQ|1|1A|G|2794
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1E
- 50S ribosomal protein L3
- Chain 1N
- 50S ribosomal protein L13
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