IL_5HCQ_142

3D structure

PDB id

5HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGAAUU*AGGAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HCQ_142 not in the Motif Atlas

Homologous match to IL_4LFB_030

Geometric discrepancy: 0.0455

The information below is about IL_4LFB_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04668.2

Basepair signature

cWW-cWW-cWW-L-R-L-R-cWW

Number of instances in this motif group

8

Unit IDs

5HCQ|1|1a|G|657
5HCQ|1|1a|G|658
5HCQ|1|1a|A|659
5HCQ|1|1a|A|660
5HCQ|1|1a|U|661
5HCQ|1|1a|U|662
*
5HCQ|1|1a|A|696
5HCQ|1|1a|G|697
5HCQ|1|1a|G|698
5HCQ|1|1a|A|699
5HCQ|1|1a|A|700
5HCQ|1|1a|C|701

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1D

50S ribosomal protein L2

Chain 1f

30S ribosomal protein S6

Chain 1k

30S ribosomal protein S11

Chain 1r

30S ribosomal protein S18