IL_5HCQ_145
3D structure
- PDB id
- 5HCQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CAAAC*GGUAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5HCQ_145 not in the Motif Atlas
- Homologous match to IL_4LFB_033
- Geometric discrepancy: 0.068
- The information below is about IL_4LFB_033
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.7
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 14
Unit IDs
5HCQ|1|1a|C|763
5HCQ|1|1a|A|764
5HCQ|1|1a|A|765
5HCQ|1|1a|A|766
5HCQ|1|1a|C|767
*
5HCQ|1|1a|G|783
5HCQ|1|1a|G|784
5HCQ|1|1a|U|785
5HCQ|1|1a|A|786
5HCQ|1|1a|G|787
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 1D
- 50S ribosomal protein L2
- Chain 1k
- 30S ribosomal protein S11
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