IL_5HCQ_153

3D structure

PDB id

5HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CCC*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CCC,GGG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HCQ_153 not in the Motif Atlas

Geometric match to IL_1ZZ5_002

Geometric discrepancy: 0.2333

The information below is about IL_1ZZ5_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

5HCQ|1|1a|C|985
5HCQ|1|1a|C|986
5HCQ|1|1a|C|987
*
5HCQ|1|1a|G|1000
5HCQ|1|1a|G|1001
5HCQ|1|1a|G|1002

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains