IL_5HCQ_166

3D structure

PDB id

5HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

5HCQ|1|1a|C|1383, 5HCQ|1|1a|A|1481

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HCQ_166 not in the Motif Atlas

Geometric match to IL_4V88_463

Geometric discrepancy: 0.1601

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

5HCQ|1|1a|C|1382
5HCQ|1|1a|C|1383
5HCQ|1|1a|G|1384
*
5HCQ|1|1a|C|1479
5HCQ|1|1a|A|1480
5HCQ|1|1a|A|1481
5HCQ|1|1a|G|1482

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1v

mRNA

Chain 1x

Transfer RNA; tRNA