IL_5HCQ_188

3D structure

PDB id

5HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GAAC*GAGUGAAAUAGAGC

Length

18 nucleotides

Bulged bases

5HCQ|1|2A|U|528, 5HCQ|1|2A|G|532

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HCQ_188 not in the Motif Atlas

Homologous match to IL_7RQB_014

Geometric discrepancy: 0.0457

The information below is about IL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60992.6

Basepair signature

cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L

Number of instances in this motif group

6

Unit IDs

5HCQ|1|2A|G|506
5HCQ|1|2A|A|507
5HCQ|1|2A|A|508
5HCQ|1|2A|C|509
*
5HCQ|1|2A|G|520
5HCQ|1|2A|A|521
5HCQ|1|2A|G|522
5HCQ|1|2A|U|523
5HCQ|1|2A|G|524
5HCQ|1|2A|A|525
5HCQ|1|2A|A|526
5HCQ|1|2A|A|527
5HCQ|1|2A|U|528
5HCQ|1|2A|A|529
5HCQ|1|2A|G|530
5HCQ|1|2A|A|531
5HCQ|1|2A|G|532
5HCQ|1|2A|C|533

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2W

50S ribosomal protein L22

Chain 2Y

50S ribosomal protein L24