IL_5HCQ_218
3D structure
- PDB id
- 5HCQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GUUG*CAUC
- Length
- 8 nucleotides
- Bulged bases
- 5HCQ|1|2A|U|1106
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5HCQ_218 not in the Motif Atlas
- Homologous match to IL_5J7L_285
- Geometric discrepancy: 0.2429
- The information below is about IL_5J7L_285
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_92446.2
- Basepair signature
- cWW-cWW-R-L-L
- Number of instances in this motif group
- 5
Unit IDs
5HCQ|1|2A|G|1104
5HCQ|1|2A|U|1105
5HCQ|1|2A|U|1106
5HCQ|1|2A|G|1107
*
5HCQ|1|2A|C|1121
5HCQ|1|2A|A|1122
5HCQ|1|2A|U|1123
5HCQ|1|2A|C|1124
Current chains
- Chain 2A
- 23S Ribosomal RNA
Nearby chains
- Chain 2Q
- 50S ribosomal protein L16
- Chain 2Z
- 50S ribosomal protein L25
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