IL_5HCQ_229

3D structure

PDB id

5HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAUG*CUAAG

Length

10 nucleotides

Bulged bases

5HCQ|1|2A|U|1465

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HCQ_229 not in the Motif Atlas

Homologous match to IL_7RQB_055

Geometric discrepancy: 0.0898

The information below is about IL_7RQB_055

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

20

Unit IDs

5HCQ|1|2A|C|1462
5HCQ|1|2A|G|1463
5HCQ|1|2A|A|1464
5HCQ|1|2A|U|1465
5HCQ|1|2A|G|1466
*
5HCQ|1|2A|C|1623
5HCQ|1|2A|U|1624
5HCQ|1|2A|A|1625
5HCQ|1|2A|A|1626
5HCQ|1|2A|G|1627

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains