IL_5HCQ_237
3D structure
- PDB id
- 5HCQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GGAAG*UGACAAC
- Length
- 12 nucleotides
- Bulged bases
- 5HCQ|1|2A|C|1589
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5HCQ_237 not in the Motif Atlas
- Homologous match to IL_7RQB_063
- Geometric discrepancy: 0.065
- The information below is about IL_7RQB_063
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_02656.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
5HCQ|1|2A|G|1571
5HCQ|1|2A|G|1572
5HCQ|1|2A|A|1573
5HCQ|1|2A|A|1574
5HCQ|1|2A|G|1575
*
5HCQ|1|2A|U|1586
5HCQ|1|2A|G|1587
5HCQ|1|2A|A|1588
5HCQ|1|2A|C|1589
5HCQ|1|2A|A|1590
5HCQ|1|2A|A|1591
5HCQ|1|2A|C|1592
Current chains
- Chain 2A
- 23S Ribosomal RNA
Nearby chains
No other chains within 10ÅColoring options: