3D structure

PDB id
5HCQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
2.8 Å

Loop

Sequence
UGGU*GCUG
Length
8 nucleotides
Bulged bases
None detected
QA status
Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5HCQ_258 not in the Motif Atlas
Geometric match to IL_3WBM_002
Geometric discrepancy: 0.3749
The information below is about IL_3WBM_002
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_85033.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
35

Unit IDs

5HCQ|1|2A|U|2120
5HCQ|1|2A|G|2121
5HCQ|1|2A|G|2122
5HCQ|1|2A|U|2123
*
5HCQ|1|2A|G|2208
5HCQ|1|2A|C|2209
5HCQ|1|2A|U|2210
5HCQ|1|2A|G|2211

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 2I
50S ribosomal protein L9

Coloring options:


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