IL_5HCQ_296

3D structure

PDB id

5HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GACAAC*GCUAAUC

Length

13 nucleotides

Bulged bases

5HCQ|1|2a|U|168

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HCQ_296 not in the Motif Atlas

Homologous match to IL_4LFB_009

Geometric discrepancy: 0.0787

The information below is about IL_4LFB_009

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_12745.1

Basepair signature

cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

1

Unit IDs

5HCQ|1|2a|G|143
5HCQ|1|2a|A|144
5HCQ|1|2a|C|145
5HCQ|1|2a|A|146
5HCQ|1|2a|A|147
5HCQ|1|2a|C|148
*
5HCQ|1|2a|G|163
5HCQ|1|2a|C|164
5HCQ|1|2a|U|165
5HCQ|1|2a|A|166
5HCQ|1|2a|A|167
5HCQ|1|2a|U|168
5HCQ|1|2a|C|169

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2t

30S ribosomal protein S20