IL_5HCQ_323

3D structure

PDB id

5HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GCAC*GUUCCC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HCQ_323 not in the Motif Atlas

Geometric match to IL_6CZR_149

Geometric discrepancy: 0.167

The information below is about IL_6CZR_149

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_93211.1

Basepair signature

cWW-cWS-cWW-L-R-cWW-L

Number of instances in this motif group

2

Unit IDs

5HCQ|1|2a|G|911
5HCQ|1|2a|C|912
5HCQ|1|2a|A|913
5HCQ|1|2a|C|914
*
5HCQ|1|2a|G|1362
5HCQ|1|2a|U|1363
5HCQ|1|2a|U|1364
5HCQ|1|2a|C|1365
5HCQ|1|2a|C|1366
5HCQ|1|2a|C|1367

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2g

30S ribosomal protein S7

Chain 2i

30S ribosomal protein S9

Chain 2x

Transfer RNA; tRNA