IL_5HCQ_324
3D structure
- PDB id
- 5HCQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GG*CAC
- Length
- 5 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5HCQ_324 not in the Motif Atlas
- Homologous match to IL_4LFB_038
- Geometric discrepancy: 0.1455
- The information below is about IL_4LFB_038
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_51454.3
- Basepair signature
- cWW-cSH-cWW
- Number of instances in this motif group
- 45
Unit IDs
5HCQ|1|2a|G|931
5HCQ|1|2a|G|932
*
5HCQ|1|2a|C|1208
5HCQ|1|2a|A|1209
5HCQ|1|2a|C|1210
Current chains
- Chain 2a
- 16S Ribosomal RNA
Nearby chains
- Chain 2m
- 30S ribosomal protein S13
- Chain 2s
- 30S ribosomal protein S19
- Chain 2x
- Transfer RNA; tRNA
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