IL_5HCQ_350
3D structure
- PDB id
- 5HCQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CGCUGAC*GGUGGAG
- Length
- 14 nucleotides
- Bulged bases
- 5HCQ|1|2A|G|976
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5HCQ_350 not in the Motif Atlas
- Homologous match to IL_9DFE_024
- Geometric discrepancy: 0.0955
- The information below is about IL_9DFE_024
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_68243.1
- Basepair signature
- cWW-L-cWW-cWW-R-L-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
5HCQ|1|2A|C|890
5HCQ|1|2A|G|891
5HCQ|1|2A|C|892
5HCQ|1|2A|U|893
5HCQ|1|2A|G|894
5HCQ|1|2A|A|895
5HCQ|1|2A|C|896
*
5HCQ|1|2A|G|972
5HCQ|1|2A|G|973
5HCQ|1|2A|U|974
5HCQ|1|2A|G|975
5HCQ|1|2A|G|976
5HCQ|1|2A|A|977
5HCQ|1|2A|G|978
Current chains
- Chain 2A
- 23S Ribosomal RNA
Nearby chains
- Chain 1P
- 50S ribosomal protein L15
- Chain 23
- 50S ribosomal protein L30
Coloring options: