3D structure

PDB id
5HCQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
2.8 Å

Loop

Sequence
GCA*UUCCC
Length
8 nucleotides
Bulged bases
5HCQ|1|2a|C|912
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5HCQ_364 not in the Motif Atlas
Homologous match to IL_4LFB_037
Geometric discrepancy: 0.1714
The information below is about IL_4LFB_037
Detailed Annotation
Minor groove platform
Broad Annotation
No text annotation
Motif group
IL_47078.3
Basepair signature
cWW-cWS-L-cWW-L
Number of instances in this motif group
4

Unit IDs

5HCQ|1|2a|G|911
5HCQ|1|2a|C|912
5HCQ|1|2a|A|913
*
5HCQ|1|2a|U|1363
5HCQ|1|2a|U|1364
5HCQ|1|2a|C|1365
5HCQ|1|2a|C|1366
5HCQ|1|2a|C|1367

Current chains

Chain 2a
16S Ribosomal RNA

Nearby chains

Chain 2g
30S ribosomal protein S7
Chain 2i
30S ribosomal protein S9
Chain 2x
Transfer RNA; tRNA

Coloring options:


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