IL_5HCR_038
3D structure
- PDB id
- 5HCR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CUAAGUG*CUUAAG
- Length
- 13 nucleotides
- Bulged bases
- 5HCR|1|1A|U|1186, 5HCR|1|1A|A|1188
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5HCR_038 not in the Motif Atlas
- Homologous match to IL_4WF9_039
- Geometric discrepancy: 0.074
- The information below is about IL_4WF9_039
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_57188.6
- Basepair signature
- cWW-tWW-L-tWW-cWW-cSH
- Number of instances in this motif group
- 6
Unit IDs
5HCR|1|1A|C|1063
5HCR|1|1A|U|1064
5HCR|1|1A|A|1065
5HCR|1|1A|A|1066
5HCR|1|1A|G|1067
5HCR|1|1A|U|1068
5HCR|1|1A|G|1069
*
5HCR|1|1A|C|1184
5HCR|1|1A|U|1185
5HCR|1|1A|U|1186
5HCR|1|1A|A|1187
5HCR|1|1A|A|1188
5HCR|1|1A|G|1189
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 19
- 50S ribosomal protein L36
- Chain 1N
- 50S ribosomal protein L13
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