IL_5HCR_174
3D structure
- PDB id
- 5HCR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CGGGAG*CAG
- Length
- 9 nucleotides
- Bulged bases
- 5HCR|1|1a|G|1426
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5HCR_174 not in the Motif Atlas
- Homologous match to IL_6CZR_172
- Geometric discrepancy: 0.2355
- The information below is about IL_6CZR_172
- Detailed Annotation
- Isolated basepair with bulged bases
- Broad Annotation
- Isolated basepair with bulged bases
- Motif group
- IL_97255.3
- Basepair signature
- cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
5HCR|1|1a|C|1423
5HCR|1|1a|G|1424
5HCR|1|1a|G|1425
5HCR|1|1a|G|1426
5HCR|1|1a|A|1427
5HCR|1|1a|G|1428
*
5HCR|1|1a|C|1437
5HCR|1|1a|A|1438
5HCR|1|1a|G|1439
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 1T
- 50S ribosomal protein L19
- Chain 1t
- 30S ribosomal protein S20
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