IL_5HCR_229

3D structure

PDB id

5HCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UUC*GAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UUC,GAA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HCR_229 not in the Motif Atlas

Homologous match to IL_4WF9_053

Geometric discrepancy: 0.2459

The information below is about IL_4WF9_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5HCR|1|2A|U|1450
5HCR|1|2A|U|1451
5HCR|1|2A|C|1452
*
5HCR|1|2A|G|1640
5HCR|1|2A|A|1641
5HCR|1|2A|A|1642

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2X

50S ribosomal protein L23