IL_5HCR_325

3D structure

PDB id

5HCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGG*UU

Length

5 nucleotides

Bulged bases

5HCR|1|2a|G|904

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HCR_325 not in the Motif Atlas

Homologous match to IL_4LFB_036

Geometric discrepancy: 0.1004

The information below is about IL_4LFB_036

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

5HCR|1|2a|G|903
5HCR|1|2a|G|904
5HCR|1|2a|G|905
*
5HCR|1|2a|U|1373
5HCR|1|2a|U|1374

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2v

mRNA