3D structure

PDB id
5HCR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
2.8 Å

Loop

Sequence
GGAACUCUG*CUGUC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5HCR_359 not in the Motif Atlas
Homologous match to IL_9DFE_066
Geometric discrepancy: 0.0576
The information below is about IL_9DFE_066
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_80252.1
Basepair signature
cWW-tSH-cWW-tHW-R-L-cWW-L-L-R
Number of instances in this motif group
10

Unit IDs

5HCR|1|2A|G|1712
5HCR|1|2A|G|1713
5HCR|1|2A|A|1714
5HCR|1|2A|A|1715
5HCR|1|2A|C|1716
5HCR|1|2A|U|1717
5HCR|1|2A|C|1718
5HCR|1|2A|U|1719
5HCR|1|2A|G|1720
*
5HCR|1|2A|C|2011
5HCR|1|2A|U|2012
5HCR|1|2A|G|2013
5HCR|1|2A|U|2014
5HCR|1|2A|C|2015

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 2E
50S ribosomal protein L3
Chain 2O
50S ribosomal protein L14

Coloring options:


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