IL_5HCR_360

3D structure

PDB id

5HCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UUGGUCG*CGGCUGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5HCR|1|2A|U|2119
5HCR|1|2A|U|2120
5HCR|1|2A|G|2121
5HCR|1|2A|G|2122
5HCR|1|2A|U|2123
5HCR|1|2A|C|2124
5HCR|1|2A|G|2125
*
5HCR|1|2A|C|2206
5HCR|1|2A|G|2207
5HCR|1|2A|G|2208
5HCR|1|2A|C|2209
5HCR|1|2A|U|2210
5HCR|1|2A|G|2211
5HCR|1|2A|G|2212

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2I

50S ribosomal protein L9