IL_5HCR_364

3D structure

PDB id

5HCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GAUGC*GCUAAUC

Length

12 nucleotides

Bulged bases

5HCR|1|2a|U|1239, 5HCR|1|2a|U|1260, 5HCR|1|2a|A|1262, 5HCR|1|2a|U|1263

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5HCR|1|2a|G|1237
5HCR|1|2a|A|1238
5HCR|1|2a|U|1239
5HCR|1|2a|G|1240
5HCR|1|2a|C|1241
*
5HCR|1|2a|G|1258
5HCR|1|2a|C|1259
5HCR|1|2a|U|1260
5HCR|1|2a|A|1261
5HCR|1|2a|A|1262
5HCR|1|2a|U|1263
5HCR|1|2a|C|1264

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2c

30S ribosomal protein S3

Chain 2i

30S ribosomal protein S9

Chain 2j

30S ribosomal protein S10

Chain 2n

30S ribosomal protein S14 type Z