IL_5HD1_054

3D structure

PDB id

5HD1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CGAUG*CUAAG

Length

10 nucleotides

Bulged bases

5HD1|1|1A|U|1465

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HD1_054 not in the Motif Atlas

Homologous match to IL_7RQB_055

Geometric discrepancy: 0.0818

The information below is about IL_7RQB_055

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

20

Unit IDs

5HD1|1|1A|C|1462
5HD1|1|1A|G|1463
5HD1|1|1A|A|1464
5HD1|1|1A|U|1465
5HD1|1|1A|G|1466
*
5HD1|1|1A|C|1623
5HD1|1|1A|U|1624
5HD1|1|1A|A|1625
5HD1|1|1A|A|1626
5HD1|1|1A|G|1627

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains