3D structure

PDB id
5HD1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
AAG*CUU
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary: AAG,CUU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5HD1_121 not in the Motif Atlas
Geometric match to IL_4LFB_061
Geometric discrepancy: 0.1871
The information below is about IL_4LFB_061
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
Isolated non-canonical cWW pair
Motif group
IL_86319.3
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
269

Unit IDs

5HD1|1|1a|A|135
5HD1|1|1a|A|136
5HD1|1|1a|G|137
*
5HD1|1|1a|C|217
5HD1|1|1a|U|218
5HD1|1|1a|U|219

Current chains

Chain 1a
16S Ribosomal RNA

Nearby chains

Chain 1t
30S ribosomal protein S20

Coloring options:


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