IL_5HD1_122

3D structure

PDB id

5HD1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GGGG*CCCC

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GGGG,CCCC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HD1_122 not in the Motif Atlas

Geometric match to IL_3WBM_002

Geometric discrepancy: 0.2451

The information below is about IL_3WBM_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

5HD1|1|1a|G|139
5HD1|1|1a|G|140
5HD1|1|1a|G|141
5HD1|1|1a|G|142
*
5HD1|1|1a|C|170
5HD1|1|1a|C|171
5HD1|1|1a|C|172
5HD1|1|1a|C|173

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1t

30S ribosomal protein S20