IL_5HD1_166
3D structure
- PDB id
- 5HD1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- CGGAUU*AUGAAG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5HD1_166 not in the Motif Atlas
- Geometric match to IL_4LFB_055
- Geometric discrepancy: 0.0944
- The information below is about IL_4LFB_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_85536.2
- Basepair signature
- cWW-tSH-L-R-tHS-cWW-cWW
- Number of instances in this motif group
- 8
Unit IDs
5HD1|1|1a|C|1285
5HD1|1|1a|G|1286
5HD1|1|1a|G|1287
5HD1|1|1a|A|1288
5HD1|1|1a|U|1289
5HD1|1|1a|U|1290
*
5HD1|1|1a|A|1311
5HD1|1|1a|U|1312
5HD1|1|1a|G|1313
5HD1|1|1a|A|1314
5HD1|1|1a|A|1315
5HD1|1|1a|G|1316
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1m
- 30S ribosomal protein S13
- Chain 1u
- 30S ribosomal protein Thx
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