IL_5HD1_229

3D structure

PDB id

5HD1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

UGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HD1_229 not in the Motif Atlas

Homologous match to IL_7RQB_053

Geometric discrepancy: 0.1136

The information below is about IL_7RQB_053

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

24

Unit IDs

5HD1|1|2A|U|1402
5HD1|1|2A|G|1403
5HD1|1|2A|A|1404
5HD1|1|2A|A|1405
5HD1|1|2A|G|1406
*
5HD1|1|2A|C|1415
5HD1|1|2A|G|1416
5HD1|1|2A|U|1417
5HD1|1|2A|A|1418
5HD1|1|2A|G|1419

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L28

Chain 27

50S ribosomal protein L34

Chain 2D

50S ribosomal protein L2