IL_5HD1_362

3D structure

PDB id

5HD1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CGCUGAC*GGUGGAG

Length

14 nucleotides

Bulged bases

5HD1|1|2A|G|976

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HD1_362 not in the Motif Atlas

Homologous match to IL_9DFE_024

Geometric discrepancy: 0.0928

The information below is about IL_9DFE_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68243.1

Basepair signature

cWW-L-cWW-cWW-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

5HD1|1|2A|C|890
5HD1|1|2A|G|891
5HD1|1|2A|C|892
5HD1|1|2A|U|893
5HD1|1|2A|G|894
5HD1|1|2A|A|895
5HD1|1|2A|C|896
*
5HD1|1|2A|G|972
5HD1|1|2A|G|973
5HD1|1|2A|U|974
5HD1|1|2A|G|975
5HD1|1|2A|G|976
5HD1|1|2A|A|977
5HD1|1|2A|G|978

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 1P

50S ribosomal protein L15

Chain 23

50S ribosomal protein L30