IL_5HKV_009

3D structure

PDB id

5HKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

GAC*GGAUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HKV_009 not in the Motif Atlas

Homologous match to IL_4WF9_012

Geometric discrepancy: 0.308

The information below is about IL_4WF9_012

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform; mini C-loop

Motif group

IL_34117.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

7

Unit IDs

5HKV|1|X|G|304
5HKV|1|X|A|305
5HKV|1|X|C|306
*
5HKV|1|X|G|409
5HKV|1|X|G|410
5HKV|1|X|A|411
5HKV|1|X|U|412
5HKV|1|X|C|413

Current chains

Chain X

23s ribosomal RNA

Nearby chains