IL_5HKV_017

3D structure

PDB id

5HKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

5HKV|1|X|G|846, 5HKV|1|X|G|850

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HKV_017 not in the Motif Atlas

Geometric match to IL_4WF9_021

Geometric discrepancy: 0.0586

The information below is about IL_4WF9_021

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_73855.1

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

10

Unit IDs

5HKV|1|X|G|719
5HKV|1|X|A|720
5HKV|1|X|A|721
5HKV|1|X|A|722
5HKV|1|X|C|723
*
5HKV|1|X|G|844
5HKV|1|X|A|845
5HKV|1|X|G|846
5HKV|1|X|A|847
5HKV|1|X|U|848
5HKV|1|X|A|849
5HKV|1|X|G|850
5HKV|1|X|C|851

Current chains

Chain X

23s ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain I

50S ribosomal protein L15