IL_5HKV_031

3D structure

PDB id

5HKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

UCCCAAAA*UA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HKV_031 not in the Motif Atlas

Geometric match to IL_4WF9_037

Geometric discrepancy: 0.067

The information below is about IL_4WF9_037

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_11411.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

5HKV|1|X|U|1048
5HKV|1|X|C|1049
5HKV|1|X|C|1050
5HKV|1|X|C|1051
5HKV|1|X|A|1052
5HKV|1|X|A|1053
5HKV|1|X|A|1054
5HKV|1|X|A|1055
*
5HKV|1|X|U|1194
5HKV|1|X|A|1195

Current chains

Chain X

23s ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L13

Chain N

50S ribosomal protein L20