IL_5HKV_034
3D structure
- PDB id
- 5HKV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.66 Å
Loop
- Sequence
- GGAAAAG*CGAAAAUGUACCGGGGC
- Length
- 24 nucleotides
- Bulged bases
- 5HKV|1|X|A|1171, 5HKV|1|X|U|1174
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5HKV_034 not in the Motif Atlas
- Geometric match to IL_4WF9_040
- Geometric discrepancy: 0.136
- The information below is about IL_4WF9_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.4
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
5HKV|1|X|G|1068
5HKV|1|X|G|1069
5HKV|1|X|A|1070
5HKV|1|X|A|1071
5HKV|1|X|A|1072
5HKV|1|X|A|1073
5HKV|1|X|G|1074
*
5HKV|1|X|C|1168
5HKV|1|X|G|1169
5HKV|1|X|A|1170
5HKV|1|X|A|1171
5HKV|1|X|A|1172
5HKV|1|X|A|1173
5HKV|1|X|U|1174
5HKV|1|X|G|1175
5HKV|1|X|U|1176
5HKV|1|X|A|1177
5HKV|1|X|C|1178
5HKV|1|X|C|1179
5HKV|1|X|G|1180
5HKV|1|X|G|1181
5HKV|1|X|G|1182
5HKV|1|X|G|1183
5HKV|1|X|C|1184
Current chains
- Chain X
- 23s ribosomal RNA
Nearby chains
- Chain B
- 50S ribosomal protein L3
- Chain G
- 50S ribosomal protein L13
- Chain J
- 50S ribosomal protein L16
- Chain Y
- 5S ribosomal RNA; 5S rRNA
Coloring options: