IL_5HKV_039

3D structure

PDB id

5HKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

CGUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

5HKV|1|X|U|1249

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HKV_039 not in the Motif Atlas

Homologous match to IL_4WF9_046

Geometric discrepancy: 0.1009

The information below is about IL_4WF9_046

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

5HKV|1|X|C|1246
5HKV|1|X|G|1247
5HKV|1|X|U|1248
5HKV|1|X|U|1249
5HKV|1|X|G|1250
5HKV|1|X|A|1251
5HKV|1|X|A|1252
5HKV|1|X|G|1253
*
5HKV|1|X|U|1272
5HKV|1|X|G|1273
5HKV|1|X|G|1274
5HKV|1|X|A|1275
5HKV|1|X|G|1276

Current chains

Chain X

23s ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L20