IL_5HKV_065

3D structure

PDB id

5HKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

UUAGC*GCGAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HKV_065 not in the Motif Atlas

Geometric match to IL_8GLP_051

Geometric discrepancy: 0.3885

The information below is about IL_8GLP_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47352.2

Basepair signature

cWW-cWW-tSH-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

5HKV|1|X|U|1891
5HKV|1|X|U|1892
5HKV|1|X|A|1893
5HKV|1|X|G|1894
5HKV|1|X|C|1895
*
5HKV|1|X|G|1900
5HKV|1|X|C|1901
5HKV|1|X|G|1902
5HKV|1|X|A|1903
5HKV|1|X|A|1904
5HKV|1|X|G|1905

Current chains

Chain X

23s ribosomal RNA

Nearby chains