IL_5HKV_067

3D structure

PDB id

5HKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

CGAAAUUCCUUG*CCCG

Length

16 nucleotides

Bulged bases

5HKV|1|X|A|1965, 5HKV|1|X|U|1971, 5HKV|1|X|C|1990

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HKV_067 not in the Motif Atlas

Homologous match to IL_4WF9_077

Geometric discrepancy: 0.0852

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84014.1

Basepair signature

cWW-L-R-cHW-cWW-L-L-tSW-L

Number of instances in this motif group

8

Unit IDs

5HKV|1|X|C|1961
5HKV|1|X|G|1962
5HKV|1|X|A|1963
5HKV|1|X|A|1964
5HKV|1|X|A|1965
5HKV|1|X|U|1966
5HKV|1|X|U|1967
5HKV|1|X|C|1968
5HKV|1|X|C|1969
5HKV|1|X|U|1970
5HKV|1|X|U|1971
5HKV|1|X|G|1972
*
5HKV|1|X|C|1988
5HKV|1|X|C|1989
5HKV|1|X|C|1990
5HKV|1|X|G|1991

Current chains

Chain X

23s ribosomal RNA

Nearby chains